Index _ | A | C | D | E | F | G | H | I | L | M | N | P | R | S | T | V _ __version__ (in module evomap) _calc_kth_order_dist() (in module evomap.mapping.evomap._core) _calc_kth_order_dist_grad() (in module evomap.mapping.evomap._core) _calc_p_matrix() (in module evomap.mapping._tsne) _calc_static_cost() (evomap.mapping.evomap._core.EvoMap static method) _calc_weights() (evomap.mapping.evomap._core.EvoMap method) _check_prepare_input_sammon() (in module evomap.mapping._sammon) _check_prepare_tsne() (in module evomap.mapping._tsne) _cmdscale() (evomap.mapping._cmds.CMDS static method) (evomap.mapping.CMDS static method) _evomap_cost_function() (in module evomap.mapping.evomap._core) _evomap_temporal_cost_function() (in module evomap.mapping.evomap._core) _get_positions_for_period() (in module evomap.mapping.evomap._core) _initialize() (evomap.mapping.evomap._core.EvoMap method) _kl_divergence() (in module evomap.mapping._tsne) _kl_divergence_grad() (in module evomap.mapping._tsne) _normalized_stress_function() (in module evomap.mapping._mds) _normalized_stress_gradient() (in module evomap.mapping._mds) _sammon_stress_function() (in module evomap.mapping._sammon) _sammon_stress_gradient() (in module evomap.mapping._sammon) _shift_elements() (in module evomap.mapping.evomap._core) _validate_input() (evomap.mapping.evomap._core.EvoMap method) A adjusted_hitrate_score() (in module evomap.metrics) align_map() (in module evomap.transform) align_maps() (in module evomap.transform) align_score() (in module evomap.metrics) avg_adjusted_hitrate_score() (in module evomap.metrics) avg_hitrate_score() (in module evomap.metrics) axis_label_fontdict (in module evomap.printer) C calc_distances() (in module evomap.preprocessing) calc_q_matrix() (in module evomap.mapping._tsne) CMDS (class in evomap.mapping) (class in evomap.mapping._cmds) cond_to_joint() (in module evomap.mapping._tsne) coocc2sim() (in module evomap.preprocessing) D DEFAULT_BUBBLE_SIZE (in module evomap.printer) DEFAULT_FONT_SIZE (in module evomap.printer) diss2sim() (in module evomap.preprocessing) DivergingGradientError draw_dynamic_map() (in module evomap.printer) draw_map() (in module evomap.printer) draw_map_sequence() (in module evomap.printer) draw_shepard_diagram() (in module evomap.printer) draw_trajectories() (in module evomap.printer) E edgelist2matrices() (in module evomap.preprocessing) edgelist2matrix() (in module evomap.preprocessing) EPSILON (in module evomap.mapping._mds) (in module evomap.mapping._optim) (in module evomap.mapping._tsne) Error evomap module EvoMap (class in evomap.mapping.evomap._core) evomap.data module evomap.data.cars module evomap.data.tnic_sample_small module evomap.data.tnic_sample_tech module evomap.data.tnic_snapshot module evomap.data.tnic_snapshot_small module evomap.datasets module evomap.mapping module evomap.mapping._cmds module evomap.mapping._mds module evomap.mapping._optim module evomap.mapping._sammon module evomap.mapping._tsne module evomap.mapping.evomap module evomap.mapping.evomap._core module evomap.mapping.evomap._evomds module evomap.mapping.evomap._evosammon module evomap.mapping.evomap._evotsne module evomap.mapping.evomap.setup module evomap.metrics module evomap.preprocessing module evomap.printer module evomap.transform module EvoMDS (class in evomap.mapping) (class in evomap.mapping.evomap) (class in evomap.mapping.evomap._evomds) EvoSammon (class in evomap.mapping) (class in evomap.mapping.evomap) (class in evomap.mapping.evomap._evosammon) EvoTSNE (class in evomap.mapping) (class in evomap.mapping.evomap) (class in evomap.mapping.evomap._evotsne) expand_matrices() (in module evomap.preprocessing) ext_modules (in module evomap.mapping.evomap.setup) F fit() (evomap.mapping._cmds.CMDS method) (evomap.mapping._mds.MDS method) (evomap.mapping._sammon.Sammon method) (evomap.mapping._tsne.TSNE method) (evomap.mapping.CMDS method) (evomap.mapping.evomap._core.EvoMap method) (evomap.mapping.evomap._evomds.EvoMDS method) (evomap.mapping.evomap._evosammon.EvoSammon method) (evomap.mapping.evomap._evotsne.EvoTSNE method) (evomap.mapping.evomap.EvoMDS method) (evomap.mapping.evomap.EvoSammon method) (evomap.mapping.evomap.EvoTSNE method) (evomap.mapping.EvoMDS method) (evomap.mapping.EvoSammon method) (evomap.mapping.EvoTSNE method) (evomap.mapping.MDS method) (evomap.mapping.Sammon method) (evomap.mapping.TSNE method) fit_attribute() (in module evomap.printer) fit_attributes() (in module evomap.printer) fit_transform() (evomap.mapping._cmds.CMDS method) (evomap.mapping._mds.MDS method) (evomap.mapping._sammon.Sammon method) (evomap.mapping._tsne.TSNE method) (evomap.mapping.CMDS method) (evomap.mapping.evomap._core.EvoMap method) (evomap.mapping.evomap._evomds.EvoMDS method) (evomap.mapping.evomap._evosammon.EvoSammon method) (evomap.mapping.evomap._evotsne.EvoTSNE method) (evomap.mapping.evomap.EvoMDS method) (evomap.mapping.evomap.EvoSammon method) (evomap.mapping.evomap.EvoTSNE method) (evomap.mapping.EvoMDS method) (evomap.mapping.EvoSammon method) (evomap.mapping.EvoTSNE method) (evomap.mapping.MDS method) (evomap.mapping.Sammon method) (evomap.mapping.TSNE method) format_tick_labels() (in module evomap.printer) G get_params() (evomap.mapping.evomap._core.EvoMap method) gradient_descent_line_search() (in module evomap.mapping._optim) gradient_descent_with_momentum() (in module evomap.mapping._optim) grid_search() (evomap.mapping.evomap._core.EvoMap method) H hitrate_score() (in module evomap.metrics) I init_params() (in module evomap.printer) L load_car_data() (in module evomap.datasets) load_tnic_sample() (in module evomap.datasets) load_tnic_sample_small() (in module evomap.datasets) load_tnic_sample_tech() (in module evomap.datasets) load_tnic_snapshot() (in module evomap.datasets) load_tnic_snapshot_small() (in module evomap.datasets) M MDS (class in evomap.mapping) (class in evomap.mapping._mds) misalign_score() (in module evomap.metrics) module evomap evomap.data evomap.data.cars evomap.data.tnic_sample_small evomap.data.tnic_sample_tech evomap.data.tnic_snapshot evomap.data.tnic_snapshot_small evomap.datasets evomap.mapping evomap.mapping._cmds evomap.mapping._mds evomap.mapping._optim evomap.mapping._sammon evomap.mapping._tsne evomap.mapping.evomap evomap.mapping.evomap._core evomap.mapping.evomap._evomds evomap.mapping.evomap._evosammon evomap.mapping.evomap._evotsne evomap.mapping.evomap.setup evomap.metrics evomap.preprocessing evomap.printer evomap.transform N normalize_dhat() (in module evomap.printer) normalize_diss_mat() (in module evomap.preprocessing) normalize_diss_mats() (in module evomap.preprocessing) P PCA() (in module evomap.transform) persistence_score() (in module evomap.metrics) plot_data() (in module evomap.printer) prepare_transparencies() (in module evomap.printer) R report_optim_progress() (in module evomap.mapping._optim) rotate_map() (in module evomap.transform) rotate_maps() (in module evomap.transform) S Sammon (class in evomap.mapping) (class in evomap.mapping._sammon) set_equal_ticks() (in module evomap.printer) set_params() (evomap.mapping.evomap._core.EvoMap method) sim2diss() (in module evomap.preprocessing) sqeuclidean_dist() (in module evomap.mapping._tsne) style_axes() (in module evomap.printer) T text_fontdict (in module evomap.printer) title_fontdict (in module evomap.printer) title_fontdict_large (in module evomap.printer) TSNE (class in evomap.mapping) (class in evomap.mapping._tsne) V validate_inputs() (in module evomap.printer)